PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004969

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

LBD

Protein Properties

Length: 211aa MW: 23124.2 Da PI: 9.5496

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26635289	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-7277	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.6e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA+ar+rdPvyG++gvi++lqqq ++l+ael+++++e Pta004969 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANARIRDPVYGCMGVISTLQQQAQSLQAELNAVRSE 141 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.643	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSKEREKGEG LNSVNRKLKR SESERVRRTM MGAQSSSNTS TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLLEV PEGQRADAAN SLVYEANARI RDPVYGCMGV 120 ISTLQQQAQS LQAELNAVRS EIMRYRCHEN AMAAAMAVGY PSMQVSDRGA ASSAISSQTS 180 DSADFAAVSP RPPMATSDTK VTVRPWHSHL H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	33	149	2	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	33	149	2	118	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.18672	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022746093.1	7e-77	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-65	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2R6WX81	2e-88	A0A2R6WX81_MARPO; Uncharacterized protein
STRING	cassava4.1_029925m	5e-76	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-63	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]