PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004982
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 210aa    MW: 23335.5 Da    PI: 8.3969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25634115PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-56510PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.62e-133761327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               + +C+f+++tG+CkyG +CkF H+p
  Pta004982 37 ETICPFYLKTGICKYGVNCKFDHPP 61
               679********************97 PP
2zf-CCCH41.91.7e-1386111227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C+f+++tGtCkyG++Ck+ H+p
  Pta004982  86 GEATCPFYMKTGTCKYGATCKYDHPP 111
                5789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.8E-83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7233462IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-113661IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-63761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-63959IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-784111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46984112IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-1186111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-688111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-590109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
KLVNANLDLH XKFHHPLNRP DPSVKLTLAG LPRREGETIC PFYLKTGICK YGVNCKFDHP  60
PPGELDTARA QQPVKLTLAG FPRREGEATC PFYMKTGTCK YGATCKYDHP PPGEAVAKAV  120
AMAATTEDIS ADYDKIDSGN VGANATDENI KIDEHCTKRS KVFCLKETGR KVDLFGVVSI  180
HHQTATWGMQ ENVKFRVVRF SREAAIWEIL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.83610.0root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072859.18e-33zinc finger CCCH domain-containing protein 37 isoform X3
RefseqXP_020265075.14e-32zinc finger CCCH domain-containing protein 8
RefseqXP_020535119.16e-33zinc finger CCCH domain-containing protein 37 isoform X4
SwissprotQ941Q31e-31C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0C9RL264e-51A0A0C9RL26_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12886_3158 transcribed RNA sequence
TrEMBLA0A0D6QT751e-51A0A0D6QT75_ARACU; Uncharacterized protein
STRINGXP_010260864.15e-31(Nelumbo nucifera)
STRINGXP_006422335.12e-31(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-32floral homeotic protein (HUA1)