PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005013
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23794.6 Da    PI: 9.7631
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-25753PU_unrefplantGDBView CDS
PUT-157a-Pinus_taeda-25754PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.9e-29454151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri+n s+rqvtfskR+ng+lKKA+ELSvLCdaeva+iifs+tgk+ e++s
  Pta005013  4 KRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKICEFAS 54
               79***********************************************86 PP
2K-box59.11.8e-20841671598
      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +  + +l+ L++++++L+++ R+++GedL+sL++keLq+Le+qL+ ++k+i +kK+++l+++ + l +k ++l+ee+ +L++kl
  Pta005013  84 KIRESQLKALREKMNKLKKKERNMVGEDLDSLTMKELQRLENQLQIGIKRISDKKMKILVQSSKLLLQKVRALEEEKIELETKL 167
                445678899***********************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.768156IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-28174IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-30155IPR002100Transcription factor, MADS-box
PfamPF003194.2E-25552IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-171833IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-173354IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.0983173IPR002487Transcription factor, K-box
PfamPF014863.8E-1586167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEMKRIQNPS RRQVTFSKRK NGLLKKAFEL SVLCDAEVAL IIFSETGKIC EFASHDDMAT  60
ILEKYRIYTE TDGNMESSSV QSVKIRESQL KALREKMNKL KKKERNMVGE DLDSLTMKEL  120
QRLENQLQIG IKRISDKKMK ILVQSSKLLL QKVRALEEEK IELETKLRIR GYSFSSATNL  180
NLGLSYSTMP SGLCDMNSNG DSFSVEIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18199694MEF2C
5f28_B3e-18199694MEF2C
5f28_C3e-18199694MEF2C
5f28_D3e-18199694MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.111010.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3G6JDN31e-148A0A3G6JDN3_PINTA; MADS-box protein 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-38AGAMOUS-like 8