PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005086
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 204aa    MW: 22578 Da    PI: 5.9524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25669186PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-20201PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-20121171255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdps   k  r++lg+f+taeeAa a+++a+ +++g
  Pta005086 121 HYRGVRRRP-WGKFAAEIRDPSR--KGSRIWLGTFDTAEEAALAYDRAAFSIRG 171
                7********.**********854..34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-32120180IPR001471AP2/ERF domain
CDDcd000181.14E-31121179No hitNo description
PfamPF008472.2E-14121171IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-23121180IPR016177DNA-binding domain
SMARTSM003801.2E-37121185IPR001471AP2/ERF domain
PROSITE profilePS5103224.434121179IPR001471AP2/ERF domain
PRINTSPR003671.8E-11122133IPR001471AP2/ERF domain
PRINTSPR003671.8E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGAAEADSMN ITMNMLELIR HHLLEVDDDI DIGGGSSPLS FSPTDSGSGV HNSIDDHDYD  60
DTETNGIATM GSCQNINSKS ISEGNENEFR QQDCASCYSY SFKVKPQEDE NGAMNQIWGR  120
HYRGVRRRPW GKFAAEIRDP SRKGSRIWLG TFDTAEEAAL AYDRAAFSIR GAKALVNFPL  180
AVAPNSEKGS PVGHMERKRK RRSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-32119182366ATERF1
3gcc_A4e-32119182366ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RKRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.165440.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ71e-135A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-26ERF family protein