PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005089

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YA

Protein Properties

Length: 204aa MW: 22324 Da PI: 7.8235

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24110462	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-37882550	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.2	2.8e-33	106	162	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF Pta005089 106 EEPVYVNAKQYNGILRRRQSRAKAESENKL-IKNRKPYLHESRHLHALKRARGCGGRF 162 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-37	104	165	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.559	105	165	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.2E-28	107	162	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.8E-23	108	130	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	110	130	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	7.8E-23	139	162	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MENTPTHTVX IDGSAPDEQQ PQADPVQQEA PPPGMIPPPA MTLLPPEFVM PHTQLELGQT 60 MVRAAYPYPD PYFGGIVAAY GPQAVIHPHM LGVPHAGVPL PSDAIEEPVY VNAKQYNGIL 120 RRRQSRAKAE SENKLIKNRK PYLHESRHLH ALKRARGCGG RFLNAKKPDE VSQENNSNGS 180 IVLVSSVDKP AAEKKNSSQQ NTDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-22	105	169	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.4063	0.0	embryo\| needle\| root\| shoot\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020268973.1	2e-70	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268974.1	2e-70	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268975.1	2e-70	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268976.1	2e-70	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	5e-49	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0D6R4Z2	1e-65	A0A0D6R4Z2_ARACU; Uncharacterized protein
TrEMBL	A0A2K1KAU8	2e-65	A0A2K1KAU8_PHYPA; Uncharacterized protein
STRING	PP1S42_174V6.1	3e-66	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-51	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]