PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005093

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YB

Protein Properties

Length: 204aa MW: 22228.8 Da PI: 7.6164

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S16787607	PU_unref	Unigene	View CDS
gnl\|UG\|Pta#S24112050	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-46330	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	186.1	2.7e-58	8	104	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 v+eqdrflPianv+rimkk+lPan+k+skdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+kyre+egek Pta005093 8 VKEQDRFLPIANVGRIMKKALPANGKVSKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEK 104 58*********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.8E-56	4	122	IPR009072	Histone-fold
SuperFamily	SSF47113	6.06E-42	11	126	IPR009072	Histone-fold
Pfam	PF00808	5.8E-28	14	78	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-21	42	60	No hit	No description
PROSITE pattern	PS00685	0	45	61	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.4E-21	61	79	No hit	No description
PRINTS	PR00615	4.4E-21	80	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGGSDFSVKE QDRFLPIANV GRIMKKALPA NGKVSKDAKE TVQECVSEFI SFITGEASDK 60 CQREKRKTIN GDDLLWAMTT LGFEDYVEPL KIYLHKYREM EGEKVSMAKQ GDPTPSKEGN 120 NAINGSSIEN PNANAYSGLN PGGYNRVQSQ SLPHMQQAAY GQPPGGMVYG HHGHIMGAYN 180 MTAPNSSGGN SSGQQQQQAP RGQW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-50	3	99	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.11763	0.0	embryo\| root\| shoot\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396797.1	2e-73	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024396798.1	2e-73	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	1e-65	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A0G3F8N3	1e-128	A0A0G3F8N3_PICWI; NF-YB3
STRING	PP1S83_179V6.2	6e-73	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-67	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]