PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005162
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 200aa    MW: 21858.2 Da    PI: 6.3643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26629297PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-43968PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-19121171255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +g+++AeIrdps+ g  +r++lg+f taeeAa a+++a+ +++g
  Pta005162 121 HYRGVRKRS-WGKFAAEIRDPSKKG--ARIWLGTFITAEEAALAYDRAAFRIRG 171
                7*****888.**********97744..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-31120179IPR001471AP2/ERF domain
CDDcd000187.53E-31121179No hitNo description
PfamPF008471.1E-11121171IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22121180IPR016177DNA-binding domain
PROSITE profilePS5103223.709121179IPR001471AP2/ERF domain
SMARTSM003808.4E-38121185IPR001471AP2/ERF domain
PRINTSPR003674.7E-10122133IPR001471AP2/ERF domain
PRINTSPR003674.7E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDITAGQMLQ LIRHHLLEEE DEMDVLEVGG NYPFSSSSSS LSFSPTVSSD FSHATASGPC  60
QTSDSTSLSG ENESAQPSSA SSSSSVSTVL RRSEAVNVKV MPLPQPQPQE EESRETIKDR  120
HYRGVRKRSW GKFAAEIRDP SKKGARIWLG TFITAEEAAL AYDRAAFRIR GSRALLNFPL  180
AFTSESESGS AVSHKRMRGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-34118184268ATERF1
3gcc_A8e-34118184268ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.178760.0embryo| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA35e-55A9NMA3_PICSI; Uncharacterized protein
STRINGGLYMA01G41520.18e-36(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-26ethylene responsive element binding factor 2