PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005203
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22511.6 Da    PI: 9.2316
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-91382551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.5e-28956148
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
               k+ien+  rqvtf+kRr g++KKA+ELSvLCda+va+i+fss+gklye
  Pta005203  9 KKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYE 56
               68*********************************************9 PP
2K-box56.31.3e-199015733100
      K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                ++   + Ge+L+s s++eL qLe++L+++++++R+kK+el+l++i+ lq ke+ l+ +n++L+++lee
  Pta005203  90 TSDEIFNGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLEE 157
                3334578********************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-32185IPR002100Transcription factor, MADS-box
CDDcd002658.93E-41278No hitNo description
PRINTSPR004041.8E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.15160161IPR002487Transcription factor, K-box
PfamPF014865.3E-1592155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRGKIEIKK IENSVHRQVT FCKRRGGLMK KAYELSVLCD ADVALIVFSS RGKLYELGTS  60
NNNNNSMRSI LERYQKCSQT AKHMNFSNNT SDEIFNGEGL GSVSFEELTQ LESRLQRGIN  120
QVRAKKHELM LDEIRALQSK EHTLRINNMM LQERLEECTN GKRLSSLLTH GFTTLLPNQH  180
VPSGYDLSNQ SLSSNVEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-19179174MEF2 CHIMERA
6byy_B9e-19179174MEF2 CHIMERA
6byy_C9e-19179174MEF2 CHIMERA
6byy_D9e-19179174MEF2 CHIMERA
6bz1_A1e-18179174MEF2 CHIMERA
6bz1_B1e-18179174MEF2 CHIMERA
6bz1_C1e-18179174MEF2 CHIMERA
6bz1_D1e-18179174MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.94551e-163root| xylem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674454.14e-50PREDICTED: MADS-box transcription factor 3-like isoform X1
RefseqXP_018674455.14e-50PREDICTED: MADS-box transcription factor 3-like isoform X2
SwissprotP293858e-49AGL5_ARATH; Agamous-like MADS-box protein AGL5
TrEMBLA0A0K0M6Z81e-125A0A0K0M6Z8_PINTB; DAL5
STRINGXP_008781978.15e-49(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.13e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Rathnakumar K, et al.
    Angiopoietin-2 mediates thrombin-induced monocyte adhesion and endothelial permeability.
    J. Thromb. Haemost., 2016. 14(8): p. 1655-67
    [PMID:27241812]
  4. Balanzà V,Roig-Villanova I,Di Marzo M,Masiero S,Colombo L
    Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks.
    Development, 2016. 143(18): p. 3372-81
    [PMID:27510967]
  5. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]