PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005227
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 196aa    MW: 21807.5 Da    PI: 10.8907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26630647PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-6317PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-202677156
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++++GVr ++ +gr++AeIrd ++    ++r++lg+f+tae+Aa+a++ a+++l+g+
  Pta005227 26 THFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDTAEDAARAYDDAARALRGA 77
               589*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-132676IPR001471AP2/ERF domain
CDDcd000188.71E-172684No hitNo description
Gene3DG3DSA:3.30.730.108.6E-312784IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-212785IPR016177DNA-binding domain
SMARTSM003806.3E-342790IPR001471AP2/ERF domain
PROSITE profilePS5103222.5632784IPR001471AP2/ERF domain
PRINTSPR003678.9E-112839IPR001471AP2/ERF domain
PRINTSPR003678.9E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAVETMRRAR VGIGGHENES RVLKETHFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDTA  60
EDAARAYDDA ARALRGAKAK TNFALAADDN ASAALALARN PRWVRTLHPQ QKWPHDLKAS  120
ALASFPSVPT LESSKRRKAG LASNCRPEFE SRNNSPCSAL SEQKTSSSPR RKTPFLLDLN  180
FPPSAEQDNE NESAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212485264ATERF1
3gcc_A1e-212485264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.9220.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9VUE01e-100H9VUE0_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-20ERF domain protein 12