PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005336

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

LBD

Protein Properties

Length: 188aa MW: 21073.4 Da PI: 5.23

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S20504907	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-24175	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.3	3.4e-40	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck++r+kC+++Cvlapyfp+++p+kf vh++FG+ +v+kll++lp e+r da++s+vyeA r +dPv+G++gvi+ l++++++l+++la++++e Pta005336 38 PCAGCKIQRKKCSHNCVLAPYFPQDNPQKFLLVHRVFGNGHVVKLLQDLPAEQRGDAVNSMVYEASQRFQDPVHGCAGVIKYLKNKVSELQSQLASTQRE 137 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-39	38	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
XCIPSFSFEN TLLAHSNEEM SDISAKSEPD QTWPSTSPCA GCKIQRKKCS HNCVLAPYFP 60 QDNPQKFLLV HRVFGNGHVV KLLQDLPAEQ RGDAVNSMVY EASQRFQDPV HGCAGVIKYL 120 KNKVSELQSQ LASTQRELAN MSMQHAKLLS FLNEGSDSHF YNGLLLESDD THALEDGDAM 180 ELWEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-34	35	138	8	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-34	35	138	8	111	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.18248	0.0	needle

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020867785.1	8e-52	LOB domain-containing protein 1
Refseq	XP_020867786.1	8e-52	LOB domain-containing protein 1
Refseq	XP_020867787.1	8e-52	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-51	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	B8LQI9	1e-93	B8LQI9_PICSI; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_1000623	3e-51	(Arabidopsis lyrata)