PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005339
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 188aa    MW: 20776.4 Da    PI: 10.2951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20690388PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-32199PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v+++G+g W+tI +          R+  ++k++w++
        Pta005339  5 KQKWTSEEEGALKAGVEKYGTGKWRTIQKDPEfghclAARSNVDLKDKWRN 55
                     79****************************9999***99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.296161IPR017930Myb domain
SuperFamilySSF466895.38E-16258IPR009057Homeodomain-like
SMARTSM007173.1E-5459IPR001005SANT/Myb domain
PfamPF002493.5E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14556IPR009057Homeodomain-like
CDDcd116603.90E-21656No hitNo description
SMARTSM005262.8E-12116181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.85E-13116185IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.294118186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-10118185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.9E-9120184IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGAPKQKWTS EEEGALKAGV EKYGTGKWRT IQKDPEFGHC LAARSNVDLK DKWRNMSVSA  60
SGQGSRDKVK TPRVKAIASL PYSSVTAEST SVFSIEATTS TTPDNLISPK SSSNGKIHSP  120
RYDGMILEAL TSMQDPNGID IATIASFMEE RHELPPNFKR ALGTKLRRLV AQEKVIKIRN  180
SYKLKDMX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.185870.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242277.11e-76PREDICTED: telomere repeat-binding factor 4
SwissprotQ8W1191e-53SMH4_MAIZE; Single myb histone 4
TrEMBLD5AA992e-83D5AA99_PICSI; Uncharacterized protein
STRINGXP_010242277.15e-76(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-53MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]