PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005402

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 185aa MW: 21728.3 Da PI: 6.0439

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26638170	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-43097	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.8	2.5e-22	93	172	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+l+Li++r+e e r++r+ +k lW+e+++ +r+++f r ++qC++kwe+l +k ++eg k+r ++ py+++l+ Pta005402 93 WTRVETLKLIKLRTEFEPRFSRSGRKTELWDEIAESLRKEQFFRDAQQCRDKWEKLMAGFKDVREGLKDR--ND---NPYYEDLH 172 ********************************************************************97..33...48999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.386	85	149	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	88	149	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-5	89	151	IPR001005	SANT/Myb domain
CDD	cd12203	1.67E-24	91	156	No hit	No description
Pfam	PF13837	1.9E-17	91	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MEEPLQIINS SPIQQQHDHV DDDHGHGHEE EVIPHPLLPP PGDTCIVPYI MPVSTSTAEK 60 HPPQPTNLAF NGPETEEDDK KRDREHKKRS KNWTRVETLK LIKLRTEFEP RFSRSGRKTE 120 LWDEIAESLR KEQFFRDAQQ CRDKWEKLMA GFKDVREGLK DRNDNPYYED LHPLLSGKCL 180 RTENL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13346	0.0	root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024519538.1	6e-52	trihelix transcription factor GTL1
Refseq	XP_024529458.1	5e-52	trihelix transcription factor GTL1
TrEMBL	A0A0D6QU72	1e-68	A0A0D6QU72_ARACU; Uncharacterized protein
STRING	EFJ08922	4e-51	(Selaginella moellendorffii)
STRING	EFJ29776	4e-51	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-13	Trihelix family protein