PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005412
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 184aa    MW: 20582.9 Da    PI: 4.2902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21716408PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-27569PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-162372255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++kG+r +k +g+Wv+eIr p++   r++++lg+++++e+Aa+a++ a  +l+g
  Pta005412 23 QFKGIRLRK-WGKWVSEIRMPNS---RAKIWLGSYDSPEKAARAYDFALYCLRG 72
               69*****99.**********933...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-272282IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-192382IPR016177DNA-binding domain
CDDcd000184.26E-272382No hitNo description
SMARTSM003801.7E-292386IPR001471AP2/ERF domain
PROSITE profilePS5103220.7192380IPR001471AP2/ERF domain
PRINTSPR003671.1E-72435IPR001471AP2/ERF domain
PfamPF008476.3E-102472IPR001471AP2/ERF domain
PRINTSPR003671.1E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVKPMPKQSS PSGSENCQIK SRQFKGIRLR KWGKWVSEIR MPNSRAKIWL GSYDSPEKAA  60
RAYDFALYCL RGSKATFNFP DSPPEIPCAS DLSPPQIQAA AARFATEDFR LPSEEDAASS  120
SSSPSEAESG IDSQQISAEQ WPAFWDSLLL EDLDSGESLN LEDFPPLDFS MDDFGILFEQ  180
TKDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-141380472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.194740.0embryo
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C5911e-38ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA9NK165e-94A9NK16_PICSI; Uncharacterized protein