PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005603

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HB-other

Protein Properties

Length: 171aa MW: 19606.1 Da PI: 9.1921

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26636129	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-47892	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	71	1.4e-22	18	73	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q++eLe+lF+k+++p++++r +L++ lgL+ rqVk+WFqNrR+++k Pta005603 18 RKRYHRHTAHQIQELEALFKKHPHPDEKQRLQLSRDLGLEPRQVKFWFQNRRTQMK 73 789999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-23	4	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.34E-21	8	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.961	15	75	IPR001356	Homeobox domain
SMART	SM00389	1.3E-19	16	79	IPR001356	Homeobox domain
CDD	cd00086	2.48E-17	18	75	No hit	No description
Pfam	PF00046	3.8E-20	18	73	IPR001356	Homeobox domain
PRINTS	PR00031	8.4E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.4E-5	55	71	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEGSGSDQDA ADQQNPARKR YHRHTAHQIQ ELEALFKKHP HPDEKQRLQL SRDLGLEPRQ 60 VKFWFQNRRT QMKAQGERAD NNTLRAENER IRGENLAIRE ALKYVLCSNC GGPPAGETSF 120 EEQHRLRLEN ARLKEELDRL SGIAAKYIGR PIQTTASLHP ISMPSLDMGM V

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006849468.1	3e-78	homeobox-leucine zipper protein ROC8 isoform X2
Refseq	XP_020526173.1	8e-78	homeobox-leucine zipper protein ROC8 isoform X1
Refseq	XP_020526174.1	3e-78	homeobox-leucine zipper protein ROC8 isoform X2
Swissprot	Q69T58	1e-67	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A0C9QWV4	8e-82	A0A0C9QWV4_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2540_2939 transcribed RNA sequence
STRING	ERN11049	1e-77	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	7e-70	homeodomain GLABROUS 11