PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005703

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YB

Protein Properties

Length: 164aa MW: 18366.2 Da PI: 4.4165

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-8526	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	44.2	4.6e-14	9	109	7	96
NF-YB 7 flPianvsrimkkvl........Panak...iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lP anv r++k l + ak i k+a e + fi ++++ a+d c + kr+tin+dd+l a+ ++ f + ++plk+ l+ +r+ ++ Pta005703 9 DLPRANVRRVVKGKLsqlmkdnpSSSAKdiaIHKEALLACSESARIFIHYLSATANDICCESKRQTINADDVLKAIEEMEFPELLDPLKTSLEVFRKQNA 108 5788888888876661111211123344333555566666777888**************************************************9876 PP NF-YB 96 e 96 Pta005703 109 S 109 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.0E-33	8	154	IPR009072	Histone-fold
SuperFamily	SSF47113	7.86E-25	10	138	IPR009072	Histone-fold
Pfam	PF00808	3.1E-8	24	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASTSEVEDL PRANVRRVVK GKLSQLMKDN PSSSAKDIAI HKEALLACSE SARIFIHYLS 60 ATANDICCES KRQTINADDV LKAIEEMEFP ELLDPLKTSL EVFRKQNASK KSESKTKSTD 120 RKRKSEGDLE MENGNGSHTE DANEAQDDFG EENKEDENDD LEED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5y26_A	2e-11	4	103	10	100	DNA polymerase epsilon subunit D
5y27_A	2e-11	4	103	10	100	DNA polymerase epsilon subunit D
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245113.1	6e-49	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	D5ACV8	1e-101	D5ACV8_PICSI; Uncharacterized protein
STRING	XP_010245113.1	2e-48	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	5e-37	nuclear factor Y, subunit B11