PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005727
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YB
Protein Properties Length: 161aa    MW: 18591.8 Da    PI: 6.3519
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S15738760PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-18282556PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB58.41.7e-18877372
      NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala 72
               ++d  lP a +++i+k++lPa+ ++++da++++ ec +efi +++se++d c +e+++ti+++ +l +l 
  Pta005727  8 KEDVSLPKATMTKIIKEMLPAHVRVTRDAQDLLVECCVEFINLISSESNDICYKEEKRTIAPEHVLESLK 77
               57899************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-26578IPR009072Histone-fold
SuperFamilySSF471131.41E-269115IPR009072Histone-fold
PfamPF008081.4E-191273IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEIVGKAKED VSLPKATMTK IIKEMLPAHV RVTRDAQDLL VECCVEFINL ISSESNDICY  60
KEEKRTIAPE HVLESLKDCP RAGTRWSKNR LEMTEEEALL EQQRMFAEAR ARMNSGNNIF  120
LGNINPNPNP NHNHSHIRVI NIEFFQXSYE VTYXILFSCK M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-24911012133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.23650.0shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350891.13e-59class 2 transcription repressor NC2 beta 2 isoform 2
RefseqXP_028237422.13e-59protein Dr1 homolog isoform X2
SwissprotP495927e-53NC2B_ARATH; Protein Dr1 homolog
TrEMBLD5A8I52e-75D5A8I5_PICSI; Uncharacterized protein
STRINGGLYMA05G07750.12e-54(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-54nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]