PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005918

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bZIP

Protein Properties

Length: 145aa MW: 16656.3 Da PI: 8.9433

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26639560	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-39325	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	6e-11	33	72	3	42
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 k+ rr+++NReAAr+sR+RKka++++Le +L++ Pta005918 33 NNKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLKQIE 72 56999************************97544444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-5	31	94	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.933	33	77	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-8	34	72	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.06E-8	36	81	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.9E-10	37	78	No hit	No description
PROSITE pattern	PS00036	0	38	53	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MEADVKVDNM SEDVNQLTLA RSKRSDQEAN QPNNKVLRRL AQNREAARKS RLRKKAYVQQ 60 LESSRIKLKQ IEQELERVKQ QGISINGHLG DHNGSGAAAF GMEYGRWVEE QNRQARELRG 120 FFTSTPEDSE LRVLVDNAIA HYDEX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.12523	0.0	root\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939598.1	2e-57	transcription factor TGA1-like isoform X2
Swissprot	P14232	6e-42	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A3S3QUL8	2e-53	A0A3S3QUL8_9MAGN; Transcription factor TGA4 isoform X1
STRING	GSMUA_Achr5P16630_001	8e-53	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.3	3e-44	TGACG motif-binding factor 6

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]