PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005960
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 141aa    MW: 15664.1 Da    PI: 9.6719
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S15734128PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-20475PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.8e-34259259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               +Dg++WrKYGqK+vkg+++prsYY+Cts +C v+k+ver+++dpk+v++tYeg+Hnh+
  Pta005960  2 EDGFRWRKYGQKVVKGNPYPRSYYKCTSLKCAVRKHVERASDDPKAVITTYEGKHNHD 59
               7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081134.371161IPR003657WRKY domain
SMARTSM007742.0E-38160IPR003657WRKY domain
PfamPF031061.1E-26259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-32261IPR003657WRKY domain
SuperFamilySSF1182908.76E-28261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
XEDGFRWRKY GQKVVKGNPY PRSYYKCTSL KCAVRKHVER ASDDPKAVIT TYEGKHNHDP  60
PLARNSNQDA AGISSPGLSG NGANAAQDKQ IQNRLTSFAK VSQGAAEGED KMHAGEVRGV  120
KLMRNNRQSD VEDIEREGSW Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-342611877Probable WRKY transcription factor 4
2lex_A9e-342611877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.10810.0xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369812.15e-35WRKY transcription factor 44-like
RefseqXP_008369813.15e-35WRKY transcription factor 44-like
RefseqXP_009338560.14e-35PREDICTED: WRKY transcription factor 44-like
RefseqXP_017187099.15e-35WRKY transcription factor 44-like
RefseqXP_018498928.14e-35PREDICTED: WRKY transcription factor 44-like
RefseqXP_019262739.16e-35PREDICTED: probable WRKY transcription factor 4
RefseqXP_021826404.15e-35WRKY transcription factor 44
RefseqXP_021826405.15e-35WRKY transcription factor 44
RefseqXP_028956973.15e-35WRKY transcription factor 44-like
SwissprotQ9ZQ704e-33WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLB8LKI12e-85B8LKI1_PICSI; Uncharacterized protein
STRINGTraes_5AS_9C6171380.13e-35(Triticum aestivum)
STRINGTRIUR3_21018-P13e-35(Triticum urartu)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]