PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005979

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

LBD

Protein Properties

Length: 139aa MW: 15568 Da PI: 8.2223

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25090886	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-29025	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	4e-41	9	104	5	100
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+lrr+CakdC++apyfp+++p+kfa vh++FGasnv k+l++lpee+r da+ss+vyeA+ar+rdP+yG+vg i++lqqq++ lk++lal+++e Pta005979 9 VKLLRRRCAKDCIFAPYFPSDDPHKFASVHRVFGASNVNKMLQDLPEEQRGDAVSSMVYEANARVRDPIYGCVGAISSLQQQVAYLKSQLALAQAE 104 589*****************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.858	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-40	9	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MACHRALLVK LLRRRCAKDC IFAPYFPSDD PHKFASVHRV FGASNVNKML QDLPEEQRGD 60 AVSSMVYEAN ARVRDPIYGC VGAISSLQQQ VAYLKSQLAL AQAEIVHLKM RQTPLSLFNT 120 NDCKMMIMDE GSSPSHILD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	10	106	16	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	10	106	16	112	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.6962	0.0	root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003607861.1	6e-64	LOB domain-containing protein 4
Swissprot	Q8LBW3	1e-53	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	G7JIR8	1e-62	G7JIR8_MEDTR; LOB domain protein
STRING	AES90058	2e-63	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-56	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]