PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006103
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 123aa    MW: 13608.4 Da    PI: 5.1556
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26640501PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-2845PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.11.3e-0946102150
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkk 50 
                lp G++F+Ptd+el+ e+L+ kv  ++      ++++   i    +i++++P++Lp +
  Pta006103  46 LPCGVKFDPTDQELI-EHLQGKVGLDNsaphplIDEFIPtIGGEdGICYSHPEKLPGT 102
                699************.99****988776776553333333554446*********933 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-1134103IPR003441NAC domain
PROSITE profilePS5100510.75646123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MAGKNRNSTG SSQLIDAKLE EYRIKQCPAC GHQIERQEAL QDWPGLPCGV KFDPTDQELI  60
EHLQGKVGLD NSAPHPLIDE FIPTIGGEDG ICYSHPEKLP GTSRDGMIFL LRLSLSFGYR  120
NIS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.76750.0shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019707315.12e-42NAC domain-containing protein 75 isoform X3
SwissprotQ9M0F88e-39NAC75_ARATH; NAC domain-containing protein 75
TrEMBLE0ZFA12e-43E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRINGXP_010267095.14e-40(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-41NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]