PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006321
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 614aa    MW: 64455.4 Da    PI: 9.1819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-59882553PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-053355123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Pta006321 33 FVCEICNKGFQRDQNLQLHRRGH 55
               89*******************88 PP
2zf-C2H212.40.00047109131123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  Pta006321 109 WKCDKCSKRYAVQSDWKAHSKTC 131
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.95E-73255No hitNo description
Gene3DG3DSA:3.30.160.602.1E-53255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9493355IPR007087Zinc finger, C2H2
SMARTSM003550.0173355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SMARTSM0035522074104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-497130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.95E-7104129No hitNo description
SMARTSM00355140109129IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MAVVIIMRYI VIADPDAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  60
LRQRTSKEIR KRVYICPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  120
QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESARVTVN NTEPVATRTT  180
TNSSSDDGPN PRPCPPDSNK VSISSTGGAV APPPLSAAWG GQAPGGGGAG GGGTGSGPRL  240
SLWLGPGPGG PGPPATLDAA SASSSSQFNV MDGTGTYPYP FLMRASNNPS ERSSAAAELS  300
RPVGGGGGGG FGTGLDIDPI CKPVKLGKRA GGTYPSRFSE LIGAMTRGGN GSMGTSTSSA  360
TSTAAPAMFS TAIPSIFSHP QPPPVHHQQQ QHNNTATAQM SATALLQKAA QMGATAASNN  420
PSLLRSFGGL AGHDNSWPPM MAAANHSSEP YPLLRQLTEG IMPMPMPMQT SMPASSSSLD  480
QVTMRELMNS LSTPAGLGNL TGLLLQSPLL APHMSNGNGN GNGSIGDQTV ACGIIKAEEL  540
GTSMKPTTLD FLGLGGSHGR TLSHSDYAMI TSMSTTGATG NEVPAPSSYT NHNSGENNRK  600
QQHSSSPAKS WDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35105168366Zinc finger protein JACKDAW
5b3h_F3e-35105168366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.139840.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.11e-125protein indeterminate-domain 1-like isoform X1
RefseqXP_024365607.11e-126protein indeterminate-domain 7-like isoform X2
TrEMBLB8LP080.0B8LP08_PICSI; Uncharacterized protein
STRINGPP1S165_3V6.11e-123(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2