PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006391

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 534aa MW: 60615.6 Da PI: 5.1562

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-124582552	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.9	1.7e-48	42	206	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....................................kvkaeekewyfFs 62 lppGfrFhPtdeel+++yLk k+++ e evi+evd+y+ ePwdLp+ + +++ ewyf+s Pta006391 42 LPPGFRFHPTDEELISCYLKGKLNHALrgAE-LEVIPEVDLYRNEPWDLPAfkfpgtvmfsfsvtivngmigfsqlglqkcknseksFLPSRDMEWYFYS 140 79******************998874344.489***********6689****************99999766554433333778** PP NAM 63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +rd+ky++g+r+nrat++gyWkatg+d++v+s ++++vg kktLvfy+grap+ge+tdW+mheyrle Pta006391 141 PRDRKYPNGSRTNRATEAGYWKATGRDRKVYS-RENTVGKKKTLVFYRGRAPQGERTDWIMHEYRLE 206 ****************************.9999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-17	32	103	IPR003441	NAC domain
PROSITE profile	PS51005	54.921	42	228	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	43	205	IPR003441	NAC domain
SuperFamily	SSF101941	1.02E-38	131	228	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
XLSATSTERQ QINYQPGKRR EKERQVEGGF DTPSFPMGRL ALPPGFRFHP TDEELISCYL 60 KGKLNHALRG AELEVIPEVD LYRNEPWDLP AFKFPGTVMF SFSVTIVNGM IGFSQLGLQK 120 CKNSEKSFLP SRDMEWYFYS PRDRKYPNGS RTNRATEAGY WKATGRDRKV YSRENTVGKK 180 KTLVFYRGRA PQGERTDWIM HEYRLEKNEC EAGPCLQNAF VLCRVFKKSG LGTRSGEQYT 240 APLERGDLSP TEKNPSPGYS GDMEVQSEDP SKPVEGIDAN LHLPSKISSK ILHDTIGDNE 300 PLNKWLDILL DDTIPNSSCV EADEDTIHTQ VDAMPDTPKI QCESRCLPSV ESELRDIPVN 360 ISFPQYRVPN GRLDAYFEEE RMLEQMLSVA PEDYTNFKAY HTSLGDTCAD ILNGGYIKVK 420 NLIPSIGELA NHDSCLWEVP YSSFDCEGSE IQLCTGSPFL QSHKQGFSFE GTAARGVCMQ 480 LHKMEDSSEG NEKDVTVRHS QNTQNDWYDI GPEMQQLHFD RFAGKKWDSE YQGK

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

XLSATSTERQ QINYQPGKRR EKERQVEGGF DTPSFPMGRL ALPPGFRFHP TDEELISCYL  60
KGKLNHALRG AELEVIPEVD LYRNEPWDLP AFKFPGTVMF SFSVTIVNGM IGFSQLGLQK  120
CKNSEKSFLP SRDMEWYFYS PRDRKYPNGS RTNRATEAGY WKATGRDRKV YSRENTVGKK  180
KTLVFYRGRA PQGERTDWIM HEYRLEKNEC EAGPCLQNAF VLCRVFKKSG LGTRSGEQYT  240
APLERGDLSP TEKNPSPGYS GDMEVQSEDP SKPVEGIDAN LHLPSKISSK ILHDTIGDNE  300
PLNKWLDILL DDTIPNSSCV EADEDTIHTQ VDAMPDTPKI QCESRCLPSV ESELRDIPVN  360
ISFPQYRVPN GRLDAYFEEE RMLEQMLSVA PEDYTNFKAY HTSLGDTCAD ILNGGYIKVK  420
NLIPSIGELA NHDSCLWEVP YSSFDCEGSE IQLCTGSPFL QSHKQGFSFE GTAARGVCMQ  480
LHKMEDSSEG NEKDVTVRHS QNTQNDWYDI GPEMQQLHFD RFAGKKWDSE YQGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	36	228	11	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	36	228	11	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	36	228	11	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	36	228	11	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	36	228	14	168	NAC domain-containing protein 19
3swm_B	1e-43	36	228	14	168	NAC domain-containing protein 19
3swm_C	1e-43	36	228	14	168	NAC domain-containing protein 19
3swm_D	1e-43	36	228	14	168	NAC domain-containing protein 19
3swp_A	1e-43	36	228	14	168	NAC domain-containing protein 19
3swp_B	1e-43	36	228	14	168	NAC domain-containing protein 19
3swp_C	1e-43	36	228	14	168	NAC domain-containing protein 19
3swp_D	1e-43	36	228	14	168	NAC domain-containing protein 19
4dul_A	1e-43	36	228	11	165	NAC domain-containing protein 19
4dul_B	1e-43	36	228	11	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.18066	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LLW8	0.0	B8LLW8_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	3e-74	NAC domain containing protein 28