PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006409
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ARR-B
Protein Properties Length: 525aa    MW: 58222 Da    PI: 6.9875
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-79782549PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.42.5e-26200252255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +r++Wt eLH++F++av+qL G +k +Pk ile+m+v+gLt+++v+SHLQkYRl
  Pta006409 200 TRVNWTLELHQQFLNAVNQL-GVHKVVPKIILEIMDVPGLTRDNVASHLQKYRL 252
                79******************.9*******************************8 PP
2Response_reg41.47.6e-15321401109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedalealkaGa 94 
                   vl+vd +  ++ +l+ +l+k +y +v++ ++ ++a+ l+ e++  +D+++  +   g dG+++l          lp+i+++ +ge + + + +k Ga
     Pta006409  32 VLVVDNDTHFLAGLEGILRKCQY-NVTTSTSVSQAISLAMENKrsFDIVMSEVYFVGEDGFKILDVVgVG--LGLPVIMMSVSGETNVVMRGIKGGA 125
                   89*********************.99*999999999999666668*******************998444..56*********************** PP

                   SEEEESS--HHHHHH CS
  Response_reg  95 kdflsKpfdpeelvk 109
                     +l Kp+ +ee+++
     Pta006409 126 CNYLIKPIRMEEVRT 140
                   *********999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.1E-2429153No hitNo description
SMARTSM004482.1E-1430142IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521725.27E-2230153IPR011006CheY-like superfamily
PROSITE profilePS5011028.86431146IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1232140IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.19E-1433145No hitNo description
PROSITE profilePS512949.357196255IPR017930Myb domain
SuperFamilySSF466891.16E-17197256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-26198257IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-23200252IPR006447Myb domain, plants
PfamPF002491.2E-6201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSEDDDHHQK RRSMKNFSPI DKEICSPIGL HVLVVDNDTH FLAGLEGILR KCQYNVTTST  60
SVSQAISLAM ENKRSFDIVM SEVYFVGEDG FKILDVVGVG LGLPVIMMSV SGETNVVMRG  120
IKGGACNYLI KPIRMEEVRT LWQHVVRTRG RQYHHVVKLK DSHGDSSENG RVADSSESTT  180
CKNGKQGSQI IKDIRGLKET RVNWTLELHQ QFLNAVNQLG VHKVVPKIIL EIMDVPGLTR  240
DNVASHLQKY RLYLKRLRGI IPEPRPVASF QARGQGKSGG TMEIRQGKSS GTMEIPQGGK  300
TSAVSPSSSS GPSSCRKEIH MRRLELAGRN LDQATMESLE QFRSQEQEQK LAASNSWQVL  360
PQVVVAGAAD HGSDGGSEVR GMRPSFHVGC IRKNMHRAFA LSANPVEDLA ARSFNPNPNP  420
NLVEDLANTK NPPEIMDLPI HLSKLQNPST TYEILKLDAA HNVEEAWPRD ELNKMYVEDL  480
TFNNFVEKDT DFSAAASLLS QLEYGAMVNA DNLLCEPSVD QSDER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16201255357Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.191950.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4661e-108A0A0D6R466_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-52response regulator 1