PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006423
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GRF
Protein Properties Length: 518aa    MW: 55923.5 Da    PI: 8.9881
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-16117PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.1e-25236280145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Pta006423 236 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKPVEG 280
                79****************************************985 PP
2QLQ64.42.8e-22166202137
        QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                s+FT++Q+q+L++Q+l++Ky++a++PvPp+Ll ++++
  Pta006423 166 SPFTPSQWQELEQQALIFKYMMAGVPVPPDLLIPLRR 202
                89*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-13166202IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.195167202IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-16167200IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.33236280IPR014977WRC domain
PfamPF088793.1E-21237279IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDFSAACLDG MLGGGLNSSN NANGNGHRLC RSASEMDLEQ TSRDQDWRSS SSASIKMART  60
DSFPTLMRSS SVISDASAAR MENNNNSSAA SDLLESAEAA MLMRSDSPYR SCLPFYHHHQ  120
QQQPQQAGGY QYTNNNNKPS GLPLSMGRAE TMNSAGMHAI LAGTRSPFTP SQWQELEQQA  180
LIFKYMMAGV PVPPDLLIPL RRNINIFSSL PVAGSTLRSN LGWSSFHLGY AANNADPEPG  240
RCRRTDGKKW RCSRDAVPDQ KYCERHMNRG RHRSRKPVEG QTPHHHHSAT AQSSSNSGAA  300
NNSSSASSLA AAAARSAVTA TTVTTTATSA TASSTSSQTN LLRSSISTHQ QQQQQIGTKL  360
SVFPASLSAG GGGVASPAAS VSPFQIPLNV DRYLNGMKGD IEGPMFESSS QSINGLSMLS  420
TMNNAWGSRN MVPAKTTSNN GMMSYETRTL IDDGGQDFGL LNQNQMSSLL SMTQNQSNDS  480
QALQGFGAGN DEQQQRGIRH NFFXXWXRTS RDXXXXXX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.20390.0embryo| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7030.0A0A0K0M703_PINTB; GRF2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.16e-52growth-regulating factor 2