PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006434
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 515aa    MW: 56523.9 Da    PI: 7.6595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-6426PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-09194214526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ GtC++Gd C FaHg
  Pta006434 194 ACPDFRK-GTCRRGDACEFAHG 214
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.42E-5188218IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6189215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929190216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5194216IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7194214IPR000571Zinc finger, CCCH-type
SMARTSM0035614224247IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484224248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGPLPWSFFS DHSSGSHGDD SVCFMSPVRS GGLNLNEIQY SSSSPTSSDY MNSSPSRFAA  60
SRGFEDDRSA LSFPDFPDMS CGYESNGDAA AFVQKDARGE MPGIRLNNAF VGSSSPRLED  120
VFCALQKYLP SNNEDEESLP AVDAYSCDEF RMYEFKVRRC MRGRSHDWTE CPFAHPGEKA  180
RRRDPRRFHY SGTACPDFRK GTCRRGDACE FAHGVFECWL HPARYRTQPC KDGRSCKRRV  240
CFFAHTPQQL RLLPALSSPS SNSRSSTALH VASALKNYSL SASAAAYDGS PLRQALEGIV  300
SSSTHGGSLI SSPTSTLVGH SQSPPPLSPP LSPSASPPLS PEPGWSNTYR VGLQKAVLNR  360
QIPGHRRHVE RIASMPSEAS RGLASPRLMT LSDTTSQQQP MGELINSLQS LRMKESSVPS  420
WLQVQPQMVN GGGGHVSPRI SNLRHCVVQS LPCTPTHSET ADDVGDWFEE PVQRVESGKD  480
LRAKIYARLT RENLNQDSSP SAESPDVGWV NELVK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.125380.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378736.11e-114zinc finger CCCH domain-containing protein 35-like
RefseqXP_024378891.11e-114zinc finger CCCH domain-containing protein 35-like isoform X1
RefseqXP_024378892.11e-114zinc finger CCCH domain-containing protein 35-like isoform X2
TrEMBLB8LMK41e-124B8LMK4_PICSI; Uncharacterized protein
STRINGPP1S177_93V6.11e-113(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-73C3H family protein