PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006653
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 454aa    MW: 49751.2 Da    PI: 8.3256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25559535PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-11482551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.41.9e-101322860
               -STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY 28 tsagCpvkkkversaedpkvveitYegeHnhek 60
               t+++C+vkkkvers   ++v+ei+Y+g Hnh+k
  Pta006653  1 THPNCQVKKKVERSP-HGQVTEIVYKGGHNHPK 32
               899************.9**************85 PP
2WRKY107.85.4e-34191249159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Pta006653 191 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 249
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.7E-4132IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-6133IPR003657WRKY domain
SuperFamilySSF1182901.57E-5133IPR003657WRKY domain
PfamPF031065.4E-6231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-38176251IPR003657WRKY domain
SuperFamilySSF1182905.89E-30183251IPR003657WRKY domain
PROSITE profilePS5081139.054186251IPR003657WRKY domain
SMARTSM007744.1E-40191250IPR003657WRKY domain
PfamPF031068.7E-27192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
THPNCQVKKK VERSPHGQVT EIVYKGGHNH PKPQPSRRSA VGSAHMIQEG AESTEATTKV  60
EGGNTWRNTE LGLLKDKDAA NCSKTWKNEP LERSSSASVV TDLSDPSSTA QVQSSSRLDS  120
LGTPEMSSTI ASDDDMEDAN DSKSVGDDGD ENESDSKRRK KENNTVDIVA ASRAIREPRV  180
VVQTTSEIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTNA GCPVRKHVER ASHDPKAVIT  240
TYEGKHNHDV PAARNSSHDN AAKGNGAAPL AMQNNVPAPM NAIPRPVPQV QDIVSRPVPQ  300
VQGIVSRFDR HLDPRNEYVK RAYYEKVVDE NLHLQDKNGG SLDLKMGAGM GFGMFGLANN  360
HTDKRQIAEG HPPFPMQIHS TTSHGLPGIQ FSGKPTVPVQ SYFGQAKDNG MRFLRPKEEQ  420
NDDSGFGNTL TFNPTPNPSL YQQIMGKLSM GPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-39182252878Probable WRKY transcription factor 4
2lex_A5e-39182252878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.344370.0root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268325.11e-120PREDICTED: probable WRKY transcription factor 34 isoform X2
RefseqXP_011621822.21e-119probable WRKY transcription factor 20
SwissprotQ6VWJ62e-71WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLD5ABY60.0D5ABY6_PICSI; Uncharacterized protein
STRINGAquca_058_00185.11e-121(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.15e-70WRKY family protein