PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006782
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 425aa    MW: 46111 Da    PI: 8.5854
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-11656PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.2e-111236327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C +++rtG C yG++C+F+H+p
  Pta006782 12 EPDCAYYMRTGLCGYGPNCRFNHPP 36
               689********************97 PP
2zf-CCCH36.77.2e-125478327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C+++++tGtCk+G++Ck++H++
  Pta006782 54 QPDCQYYLKTGTCKFGATCKYHHPR 78
               789********************96 PP
3zf-CCCH361.1e-1199124227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C +++rtG CkyG  CkF+H++
  Pta006782  99 GEKECAYYMRTGSCKYGVHCKFHHPQ 124
                6789********************97 PP
4zf-CCCH36.57.9e-12266292127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                y+++ C+++++tG Ck+G +Ck++H++
  Pta006782 266 YGQPDCQYYMKTGDCKFGTTCKYHHPK 292
                899**********************96 PP
5zf-CCCH36.57.9e-12313337226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C f++r+G+Ck+G+ CkF H+
  Pta006782 313 DQPACTFYSRYGICKFGPACKFDHP 337
                6899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.695937IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-61236IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-91236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-51535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3945179IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-65178IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-95478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-65579IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-45778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08997125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-697125IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-497124IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-999124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4103123IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6265292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6265294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441265293IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9266292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4271292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718311339IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6311338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5313339IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9313337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
VESGSYPERV DEPDCAYYMR TGLCGYGPNC RFNHPPNLKQ AIASKGEFPE RVGQPDCQYY  60
LKTGTCKFGA TCKYHHPRDR NGLRGQVQMN FLGLPMRQGE KECAYYMRTG SCKYGVHCKF  120
HHPQPTTIMP VSGYASSGSP TTPASSYPPG ILSWPLPRSS YVPGHRLQGS PTYVPMPIIF  180
SPTQGVMPMP WNNYQGPLSP LLSPERHQQP LGTGVAYKSF QQSDSSASGV QSAVTPLIQA  240
GSAAMVLPTV QAQPSVGQKE SFPERYGQPD CQYYMKTGDC KFGTTCKYHH PKERVAQSPT  300
CVLSPIGLPL RPDQPACTFY SRYGICKFGP ACKFDHPLGG VSYSPSASSL SEQPVAPYPR  360
GSSPPRMLVR SSSSENSQAA LAVKGQSSRL EESASFKHHS PTDGPVGEKE ADTSNSVAAV  420
LSESA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.213010.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.11e-141zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.11e-141zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.11e-141zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373417.11e-141zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF91e-121ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D6R4110.0A0A0D6R411_ARACU; Uncharacterized protein
STRINGXP_008218439.11e-134(Prunus mume)