PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006793
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 424aa    MW: 48441 Da    PI: 7.0815
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-40982552PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix107.49.5e-34206290186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+k e++ Li++r++me+r++++ +k+plWee++++m++ g+ rs+k+Ckekwen+nk+++k k++++kr +e+s+tcpyf+ql+
  Pta006793 206 RWPKPEIMSLIRLRTNMERRFQEAGAKGPLWEEIASNMSRLGYDRSAKRCKEKWENINKYFRKAKDSNRKR-PENSKTCPYFQQLD 290
                8*********************************************************************8.9999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.282199263IPR017877Myb-like domain
PfamPF138371.2E-22205292No hitNo description
CDDcd122031.03E-30205270No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
XFVRRNTIDA ADSCFGVTTR TNLTESPGLD FNGDGASQKY ADTHHNSEGF SLSSDSSSDD  60
EYSHDIQENH IISRGKRKRK SWKSKMKMYF DAQMKKFMDR QEAWLEKVLD TLEQREQERV  120
SREEAWRRQE AARLEREHQL WSNERARAAT CDAAFISALQ KITGQNLQLP EIFTLPPPQN  180
TMNPEAQDQQ DLVNREKETY DPNNKRWPKP EIMSLIRLRT NMERRFQEAG AKGPLWEEIA  240
SNMSRLGYDR SAKRCKEKWE NINKYFRKAK DSNRKRPENS KTCPYFQQLD SLYRQGALGF  300
SNGGSSTTAT STSTKLSNPP DGVHDQTTTD ELVLQPCTSS HENDEHREAV EILGQLMPSS  360
EGGCTHNNIN NDNNNNGSNG HPTPGASSNN NNCVQFFSGA AENGCNWEGY PMKLKIKQQQ  420
QQQH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.122150.0root| shoot
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-82trihelix transcription factor GTL1-like
SwissprotQ391171e-62TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K1J0Q13e-81A0A2K1J0Q1_PHYPA; Uncharacterized protein
TrEMBLA0A2R6W4G13e-81A0A2R6W4G1_MARPO; Uncharacterized protein
TrEMBLA9RNY91e-82A9RNY9_PHYPA; Predicted protein (Fragment)
STRINGPP1S19_341V6.16e-82(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-45Trihelix family protein