PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006814

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 421aa MW: 45175.6 Da PI: 8.3441

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-41967	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.3	7.4e-17	53	143	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++ v +L++a+++++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry++++++ +++ ++ + s++p++++l+ Pta006814 53 EWSEGAVTTLLDAYESKWLLRNRAKLKGNDWEDVARHVstraNATKSVKTQTQCKNKIESMKKRYRAEAATLNGNnSNVNASSWPLYSRLD 143 5***********************************99888888899***************99988885678899****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-19	51	143	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MESYSRNPXP DRGETGRSRC PGLRNASRSE DPGSVSETRF SGPKTPERVK RDEWSEGAVT 60 TLLDAYESKW LLRNRAKLKG NDWEDVARHV STRANATKSV KTQTQCKNKI ESMKKRYRAE 120 AATLNGNNSN VNASSWPLYS RLDGLLRCRT AAAVAGDANP NPSSNAIGNP PPDLSLMESP 180 PPPLLLPPPP PPVEERERQA EGQGQGQGQG QGQGQGEGEG EGEGQGQGQG QGQEGQRQAQ 240 GQGQKQEEVE LAPLEAAVAQ DSNQADDGSN TIPNRKESAA LDTDTSTPRS KIAHAPCDGS 300 GKGVANNYSC KRRKSSGGGG GGGGGSSEVA ESIRSFADSI VKLEQAKMRL YKDSERLRAE 360 TEVRRGEMEL KRTEIIAKTQ LQIARLLSGK NGQGVDYSPI VGIFGSRAEL LSSMLGFLYH 420 C

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MESYSRNPXP DRGETGRSRC PGLRNASRSE DPGSVSETRF SGPKTPERVK RDEWSEGAVT  60
TLLDAYESKW LLRNRAKLKG NDWEDVARHV STRANATKSV KTQTQCKNKI ESMKKRYRAE  120
AATLNGNNSN VNASSWPLYS RLDGLLRCRT AAAVAGDANP NPSSNAIGNP PPDLSLMESP  180
PPPLLLPPPP PPVEERERQA EGQGQGQGQG QGQGQGEGEG EGEGQGQGQG QGQEGQRQAQ  240
GQGQKQEEVE LAPLEAAVAQ DSNQADDGSN TIPNRKESAA LDTDTSTPRS KIAHAPCDGS  300
GKGVANNYSC KRRKSSGGGG GGGGGSSEVA ESIRSFADSI VKLEQAKMRL YKDSERLRAE  360
TEVRRGEMEL KRTEIIAKTQ LQIARLLSGK NGQGVDYSPI VGIFGSRAEL LSSMLGFLYH  420
C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	325	SGGGGGGGGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.9123	0.0	embryo\| root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9SB35	1e-106	A0A0C9SB35_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_928_1942 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-47	sequence-specific DNA binding transcription factors