PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006824
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 420aa    MW: 46204.9 Da    PI: 8.898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-36528PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.5e-1877125355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+ +l+g
  Pta006824  77 FRGVRQRS-WGKWVAEIREPRK---RARKWLGTFATAEDAARAYDRAAFALYG 125
                8****999.**********954...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-3576139IPR001471AP2/ERF domain
PfamPF008476.4E-1276125IPR001471AP2/ERF domain
PROSITE profilePS5103221.98376133IPR001471AP2/ERF domain
CDDcd000185.87E-1976133No hitNo description
PRINTSPR003671.8E-97788IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-2877132IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2077132IPR016177DNA-binding domain
PRINTSPR003671.8E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
GPEKXIKCSP ATGYFTNDTQ FTIYHFERRK GKEYYNMVGE GSGAEETGRA QTPPGQVGNG  60
KRKCKGKGGP DNNKFRFRGV RQRSWGKWVA EIREPRKRAR KWLGTFATAE DAARAYDRAA  120
FALYGSRAHL NLRPPSARPP VSSQTTTLRP LLPRPPALNP IADTHHRFLL SGFSVSPSLQ  180
FNGLQGGAVL VPATSMQHYS LLDRLTRDRN LQPAPPQSTL NCEQALHVAA TVKPQFVLQN  240
NNIEDVPVSV PVPFPVPVPV PASSLMSFEG LRVTDRKNKG NAKNEQHIIQ QQPADPCKSH  300
NTNSCQPVLV SSSPVLMNPC VGNEYYNDTG SYTFSPTVAA NLSLSLPPTG AKEATVNQAA  360
ASMIPRDQVP PSPAFMWQCT QEDYEQAMMT ASLGVMDTNN PCCMWDYDTP DTDSFMFDSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1877132359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.195170.0embryo