PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006913

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

WRKY

Protein Properties

Length: 408aa MW: 45043.7 Da PI: 7.4112

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-55504	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.2e-29	194	252	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ ++++ prsYY+C+ a Cpvkk+v+r+a+dp++v++tYegeH+h+ Pta006913 194 SDGCQWRKYGQKMTRNNPLPRSYYKCAWApACPVKKQVQRCAQDPTIVITTYEGEHTHS 252 6************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-31	181	252	IPR003657	WRKY domain
PROSITE profile	PS50811	26.222	188	254	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-25	189	253	IPR003657	WRKY domain
SMART	SM00774	8.2E-33	193	253	IPR003657	WRKY domain
Pfam	PF03106	5.3E-25	195	251	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
XAGEQCSAPY SADCEEVNIE EMESHKMQMT LVVAEINRVN EENQKLKSVL KSMNSKCKYL 60 QKHITSLVQQ PKCIDENEIF NPLCLGSMNV ELGRAVSPES DQSSSCNERG EEKEKIVKFM 120 DDQKLPSKKR KINYMHLEQA DNGITSSMDE SACHNGESPN KKLHVPNKGF SEQRTAAKKR 180 IVAERTRSEK SAGSDGCQWR KYGQKMTRNN PLPRSYYKCA WAPACPVKKQ VQRCAQDPTI 240 VITTYEGEHT HSVSPLAMAV MHAGSSNQLI GEGMNTENVV ADNQCIPCIA PVSTSSTFPT 300 ITLDLTDDRP SRPSLQLQPP HLTAGRFQQS SPLSSDMGQV SDHNERGNYS SMMQDYLASI 360 KADPNFTAAL SVAIAGCLLE MGDPARGMMP KFPPSRQCAN GSTHKAFA

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

XAGEQCSAPY SADCEEVNIE EMESHKMQMT LVVAEINRVN EENQKLKSVL KSMNSKCKYL  60
QKHITSLVQQ PKCIDENEIF NPLCLGSMNV ELGRAVSPES DQSSSCNERG EEKEKIVKFM  120
DDQKLPSKKR KINYMHLEQA DNGITSSMDE SACHNGESPN KKLHVPNKGF SEQRTAAKKR  180
IVAERTRSEK SAGSDGCQWR KYGQKMTRNN PLPRSYYKCA WAPACPVKKQ VQRCAQDPTI  240
VITTYEGEHT HSVSPLAMAV MHAGSSNQLI GEGMNTENVV ADNQCIPCIA PVSTSSTFPT  300
ITLDLTDDRP SRPSLQLQPP HLTAGRFQQS SPLSSDMGQV SDHNERGNYS SMMQDYLASI  360
KADPNFTAAL SVAIAGCLLE MGDPARGMMP KFPPSRQCAN GSTHKAFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-19	185	253	9	76	Probable WRKY transcription factor 4
2lex_A	4e-19	185	253	9	76	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	130	QKLPSKKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.19784	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A482CVK9	0.0	A0A482CVK9_9SPER; WRKY164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	2e-39	WRKY family protein