PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006975

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB

Protein Properties

Length: 399aa MW: 42720.3 Da PI: 6.9773

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-2708	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W+ I+r ++ gR++k+c++rw + Pta006975 10 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIP-GRSGKSCRLRWCNQ 55 79****************************.*********985 PP
2	Myb_DNA-binding	54.6	2.6e-17	64	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed +++a++++G++ W+tIar ++ gRt++ +k++w++ Pta006975 64 PFSPHEDATIIQAHARHGNK-WATIARLLP-GRTDNAIKNHWNST 106 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.522	5	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-31	8	103	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-16	9	58	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-17	10	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	11	63	IPR009057	Homeodomain-like
CDD	cd00167	2.67E-15	12	54	No hit	No description
SMART	SM00717	1.2E-14	61	109	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.82	62	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-23	64	110	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-14	64	106	IPR001005	SANT/Myb domain
CDD	cd00167	9.97E-12	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MAMAVAERIK GPWSPEEDAS LHKLVEKYGP RNWSQISRGI PGRSGKSCRL RWCNQLSPQV 60 EHRPFSPHED ATIIQAHARH GNKWATIARL LPGRTDNAIK NHWNSTLRRR YHGEKDQSNG 120 LAVNLESAAE DKETMTPMTP VTATATATAT AMPVALVFPT AADNVRKRSN SSCSANDNPG 180 DAEVESCRLK RLNFSESPSS SENINNNNNN EEAVSGHCNS AAAPGSSPGQ QLHRPVPRQS 240 AFNCYEAVKV QEEASASVSA SGSAGAFDPP TSLSLSLPGS ASTSENNSSG ECSPTEQSSE 300 MKYAKFQAYQ QPTGYSFANP FPVGGYMKTE EAMAMMSTAV KIAIGQALPL IFQLPSGNSQ 360 EGCSGDSANY GGSLLSIMRE MIAKEVQSYT NGSPCSNQG

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MAMAVAERIK GPWSPEEDAS LHKLVEKYGP RNWSQISRGI PGRSGKSCRL RWCNQLSPQV  60
EHRPFSPHED ATIIQAHARH GNKWATIARL LPGRTDNAIK NHWNSTLRRR YHGEKDQSNG  120
LAVNLESAAE DKETMTPMTP VTATATATAT AMPVALVFPT AADNVRKRSN SSCSANDNPG  180
DAEVESCRLK RLNFSESPSS SENINNNNNN EEAVSGHCNS AAAPGSSPGQ QLHRPVPRQS  240
AFNCYEAVKV QEEASASVSA SGSAGAFDPP TSLSLSLPGS ASTSENNSSG ECSPTEQSSE  300
MKYAKFQAYQ QPTGYSFANP FPVGGYMKTE EAMAMMSTAV KIAIGQALPL IFQLPSGNSQ  360
EGCSGDSANY GGSLLSIMRE MIAKEVQSYT NGSPCSNQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	5e-41	7	110	1	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.12913	0.0	embryo\| needle\| root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LM22	0.0	B8LM22_PICSI; Uncharacterized protein