PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006986

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bHLH

Protein Properties

Length: 398aa MW: 43068.9 Da PI: 8.0536

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-26582549	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00047	294	333	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +A+ YIk Lq Pta006986 294 VRKEKLGERITALQQLVSPF-----GKTDTASVLFEAMGYIKFLQ 333 57778889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.128	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-10	293	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.75E-6	293	337	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-7	293	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEERKSRSLS DSWAKLLDTG TGLPDHGVSV INHATLWDHI RTPLYGMESS STSTAEIKDC 60 WMNSPAGNDV SWPSNEVKIL PSSQHSRQIA EQNRWIASSS PFCSSSNNNN NNNKTDDNKS 120 NNNNAHGNRE AFCYSDGNAG KFLFRPDAFP CGPFTKLLDP TNTLPPDSLD LELEGFPASS 180 KVSIPLVQLP GPLKAPATFP SSNILTFQSN MNKLDMPYTS PSPKPVIVQQ QKSGGSPSSS 240 PSTSSSNNNL QKNAVDEGGE CTTEQKRSSD QAGLFNAAFK KPRTEASAGP PMKVRKEKLG 300 ERITALQQLV SPFGKTDTAS VLFEAMGYIK FLQDQVQVLS SPYLKGIPSS QKDGRGDQAK 360 YDLRSRGLCL VPVSCTLHVA NNNGADFWTS GIGSGSKF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEERKSRSLS DSWAKLLDTG TGLPDHGVSV INHATLWDHI RTPLYGMESS STSTAEIKDC  60
WMNSPAGNDV SWPSNEVKIL PSSQHSRQIA EQNRWIASSS PFCSSSNNNN NNNKTDDNKS  120
NNNNAHGNRE AFCYSDGNAG KFLFRPDAFP CGPFTKLLDP TNTLPPDSLD LELEGFPASS  180
KVSIPLVQLP GPLKAPATFP SSNILTFQSN MNKLDMPYTS PSPKPVIVQQ QKSGGSPSSS  240
PSTSSSNNNL QKNAVDEGGE CTTEQKRSSD QAGLFNAAFK KPRTEASAGP PMKVRKEKLG  300
ERITALQQLV SPFGKTDTAS VLFEAMGYIK FLQDQVQVLS SPYLKGIPSS QKDGRGDQAK  360
YDLRSRGLCL VPVSCTLHVA NNNGADFWTS GIGSGSKF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.3195	0.0	embryo\| needle\| root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P269	0.0	A9P269_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	5e-40	bHLH family protein