PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007121

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C3H

Protein Properties

Length: 384aa MW: 40383 Da PI: 6.6307

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-75827	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	103	125	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr++ C+yG +C++ Hgp Pta007121 103 ECRRYKTDEGCPYGLTCRYKHGP 125 6********************96 PP
2	zf-CCCH	29.1	1.7e-09	244	270	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f C++Gd+C+FaHg+ Pta007121 244 YKTRLCNRFNTDPGCRFGDKCHFAHGE 270 9************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8	100	125	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.028	103	126	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-5	104	129	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.549	178	205	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-14	243	275	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.784	243	271	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.6E-4	243	270	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	244	270	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.27E-8	244	274	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
YHSGPNPNQG HGFNPNAAGA NPNPNPTLNP NSGVNEVMQG PPQGGYPPAM GGGQYAGGSG 60 ASYGGGSYGG GSYENGNHST HFEVLGFQQQ HQQGSNVNVG DLECRRYKTD EGCPYGLTCR 120 YKHGPTDERD FNIHVPSSGG KSKPCMKFFR CSNSLKAADY FEISFQWQVN YTVIHVSECI 180 EVLMSDISTS GCPYGEGCHF SHYVVGGIAA LGLAPVQTMP AATMAPPRKQ PGPIGDPSAT 240 VSGYKTRLCN RFNTDPGCRF GDKCHFAHGE SDLRSSNNIS ASNRNGVPMQ SAPAIYDNGP 300 LATVSNPAGF VDATAYGNSA STATYGNSAS TAAYGNSVVY SANTFPSSQS YAEPTPPGVA 360 ANTPFVXNYN MPVENSSQXP XVXX

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

YHSGPNPNQG HGFNPNAAGA NPNPNPTLNP NSGVNEVMQG PPQGGYPPAM GGGQYAGGSG  60
ASYGGGSYGG GSYENGNHST HFEVLGFQQQ HQQGSNVNVG DLECRRYKTD EGCPYGLTCR  120
YKHGPTDERD FNIHVPSSGG KSKPCMKFFR CSNSLKAADY FEISFQWQVN YTVIHVSECI  180
EVLMSDISTS GCPYGEGCHF SHYVVGGIAA LGLAPVQTMP AATMAPPRKQ PGPIGDPSAT  240
VSGYKTRLCN RFNTDPGCRF GDKCHFAHGE SDLRSSNNIS ASNRNGVPMQ SAPAIYDNGP  300
LATVSNPAGF VDATAYGNSA STATYGNSAS TAAYGNSVVY SANTFPSSQS YAEPTPPGVA  360
ANTPFVXNYN MPVENSSQXP XVXX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	71	SGASYGGGSYGGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.3562	0.0	embryo\| root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6QZW4	2e-90	A0A0D6QZW4_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-08	C3H family protein