PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007182
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family M-type_MADS
Protein Properties Length: 379aa    MW: 43485.1 Da    PI: 5.8359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-7448PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-141351543
               SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                ++ r+ tf kR++g+ KK +ELS+LC++e++++ f+++
  Pta007182 13 RHTSRNMTFMKRKKGLEKKVKELSILCGVEACMVCFGPQ 51
               57899********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.857149IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-212102IPR002100Transcription factor, MADS-box
CDDcd002666.83E-22291No hitNo description
PRINTSPR004048.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141451IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGRAKIPIKW IPRHTSRNMT FMKRKKGLEK KVKELSILCG VEACMVCFGP QMDQQTTSDY  60
PDVWPGKSKA LEIVERYRNL SKEEQAKKKL DNSSFLEQRI KKLKVELSAK RKENRELEME  120
AVYSWDACLN YFTIDQLKDL VDYIDIRLET ANERMNFLSR DEREISNGAR QQMEDGGSYN  180
SMMPYQSGHD SSGSTLGSFE ALSEFEGHYK ELMSSCETVA MDYSKANPPF IRAFNDYHAP  240
NYKEAMDNGE DDRMAVCNSH LMVNESFPLL GIDGVNPIQS STGSCSQWCR TITPCSLHNP  300
LYSTCPQHDG MNPTIQQVQF SCEPHYQQWL DEMMESQTFQ RVLGDEGINF QHDSGVRPTP  360
LLLNRSSGSN DHCYIKNIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-19AGAMOUS-like 80