PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007203

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C2H2

Protein Properties

Length: 377aa MW: 42041.9 Da PI: 6.2559

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-70235	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6e-06	214	233	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C Cgk+F+r n++ H+ Pta007203 214 FSCAVCGKTFNRYNNMQMHM 233 89*****************9 PP
2	zf-C2H2	12	0.00063	298	320	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ Pta007203 298 FACRKCSKAFAVRGDWRTHEKNC 320 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.61E-5	207	236	No hit	No description
PROSITE profile	PS50157	10.887	214	241	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.22	214	236	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-5	214	233	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	216	236	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.14E-5	284	318	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	285	318	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	78	298	318	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MEMMMNSRGY QYSQSSMAVP PSISFHRLPL GEWINPQFVM EPSVAQLPSA IPFLYDHGIV 60 SLNNQAESVK SSLLHFPCHP AAAASMIPRT YPAAADPELR DNEDEEEDDE EPFLSLRPPG 120 QTEAAIKNNC ASSSSHPCSY VTDQDDSDDN VTVALQIGLP NSELRECRSE GAGEYNDAVS 180 MSPDDGCFQT GEKLAEGQYW IPTPAQILVG PTQFSCAVCG KTFNRYNNMQ MHMWGHGSQY 240 RKGPDSLRGT KPSAILRLPC YCCAQGCRNN IHHPRSKPLK DFRTLQTHYK RKHGMKPFAC 300 RKCSKAFAVR GDWRTHEKNC GKLWFCTCGS DFKHKRSLKD HIRAFGNGHA PHGVETCEDD 360 DDTPSEEVDD DYSAGSH

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MEMMMNSRGY QYSQSSMAVP PSISFHRLPL GEWINPQFVM EPSVAQLPSA IPFLYDHGIV  60
SLNNQAESVK SSLLHFPCHP AAAASMIPRT YPAAADPELR DNEDEEEDDE EPFLSLRPPG  120
QTEAAIKNNC ASSSSHPCSY VTDQDDSDDN VTVALQIGLP NSELRECRSE GAGEYNDAVS  180
MSPDDGCFQT GEKLAEGQYW IPTPAQILVG PTQFSCAVCG KTFNRYNNMQ MHMWGHGSQY  240
RKGPDSLRGT KPSAILRLPC YCCAQGCRNN IHHPRSKPLK DFRTLQTHYK RKHGMKPFAC  300
RKCSKAFAVR GDWRTHEKNC GKLWFCTCGS DFKHKRSLKD HIRAFGNGHA PHGVETCEDD  360
DDTPSEEVDD DYSAGSH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13639	0.0	root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385058.1	1e-129	zinc finger protein WIP6-like
Refseq	XP_024385059.1	1e-129	zinc finger protein WIP6-like
Swissprot	Q9SVY1	1e-111	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2K1K471	1e-127	A0A2K1K471_PHYPA; Uncharacterized protein
STRING	PP1S203_59V6.1	1e-128	(Physcomitrella patens)
STRING	PP1S359_44V6.1	1e-128	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]