PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007235

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 374aa MW: 42702.6 Da PI: 4.3641

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-21257	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.1	2.1e-54	22	151	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 ppGfrF+P+dee+v +yLk+kv+g+k+e+ +vi+e+d+yk+ePwdLp k + +++ ewyfF++rd+ky++g+r+nrat++gyWkatgkd++v s+ ++ Pta007235 22 PPGFRFRPSDEEIVGYYLKNKVHGNKFEF-DVIREIDLYKCEPWDLPeKsILPSRDLEWYFFCPRDRKYPNGSRSNRATEAGYWKATGKDRKVSSRsNNY 120 9************************99.9***********95434455777*********************************987777 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 ++g+kktLvfykgrap+ge+tdW+mheyrle Pta007235 121 KIGTKKTLVFYKGRAPNGERTDWLMHEYRLE 151 8**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-63	9	173	IPR003441	NAC domain
PROSITE profile	PS51005	59.081	21	173	IPR003441	NAC domain
Pfam	PF02365	9.4E-29	22	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
ARVGFDEKWM ASSVQAAAVN FPPGFRFRPS DEEIVGYYLK NKVHGNKFEF DVIREIDLYK 60 CEPWDLPEKS ILPSRDLEWY FFCPRDRKYP NGSRSNRATE AGYWKATGKD RKVSSRSNNY 120 KIGTKKTLVF YKGRAPNGER TDWLMHEYRL EGTQCKGGTN LQDLYVLSRV FRKPRQGSND 180 QETFQEPFPI INKTSSPTDG SDGDIEGQSE DASPGKPEDD APASSRSETS SEILDNKIED 240 NCIDGPMECP EDISNPNCNS VSHRDTSTKE NDDSQRRNQQ LQNDPFYSPY DYEFPLIFNN 300 PYSDYSLGTQ VNFSVMEPEA FERDFDFGSV SDQDNIDLAS MLNSIDXEDL YPLLPIIEEE 360 KXDXPCVAGX XTSM

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

ARVGFDEKWM ASSVQAAAVN FPPGFRFRPS DEEIVGYYLK NKVHGNKFEF DVIREIDLYK  60
CEPWDLPEKS ILPSRDLEWY FFCPRDRKYP NGSRSNRATE AGYWKATGKD RKVSSRSNNY  120
KIGTKKTLVF YKGRAPNGER TDWLMHEYRL EGTQCKGGTN LQDLYVLSRV FRKPRQGSND  180
QETFQEPFPI INKTSSPTDG SDGDIEGQSE DASPGKPEDD APASSRSETS SEILDNKIED  240
NCIDGPMECP EDISNPNCNS VSHRDTSTKE NDDSQRRNQQ LQNDPFYSPY DYEFPLIFNN  300
PYSDYSLGTQ VNFSVMEPEA FERDFDFGSV SDQDNIDLAS MLNSIDXEDL YPLLPIIEEE  360
KXDXPCVAGX XTSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-50	19	173	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-50	19	173	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-50	19	173	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-50	19	173	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-50	19	173	18	168	NAC domain-containing protein 19
3swm_B	4e-50	19	173	18	168	NAC domain-containing protein 19
3swm_C	4e-50	19	173	18	168	NAC domain-containing protein 19
3swm_D	4e-50	19	173	18	168	NAC domain-containing protein 19
3swp_A	4e-50	19	173	18	168	NAC domain-containing protein 19
3swp_B	4e-50	19	173	18	168	NAC domain-containing protein 19
3swp_C	4e-50	19	173	18	168	NAC domain-containing protein 19
3swp_D	4e-50	19	173	18	168	NAC domain-containing protein 19
3ulx_A	4e-50	17	150	11	140	Stress-induced transcription factor NAC1
4dul_A	4e-50	19	173	15	165	NAC domain-containing protein 19
4dul_B	4e-50	19	173	15	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S864	2e-97	A0A0C9S864_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5693_2745 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	2e-77	NAC domain containing protein 28