PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007253

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bZIP

Protein Properties

Length: 373aa MW: 42592.7 Da PI: 4.1532

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-55072	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.6e-11	54	112	4	62
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 k rrk+kNR+AA+ R RKk+++ +Le+ + L +eN++L++ + +l +e k+++e Pta007253 54 EKLNRRKMKNRVAAQTARDRKKERVGKLEKALQLLMEENSKLRSDNRNLINENTKMRQE 112 5899****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-8	51	115	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.794	53	116	IPR004827	Basic-leucine zipper domain
CDD	cd14691	6.51E-20	53	102	No hit	No description
Pfam	PF00170	4.5E-9	54	112	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.85E-9	54	112	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-11	56	112	No hit	No description
PROSITE pattern	PS00036	0	58	73	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
XTKQVPSVPP MALKRPAPEP LTIDDVVDLI STSSNSHPAP PRKRERLTHL SMEEKLNRRK 60 MKNRVAAQTA RDRKKERVGK LEKALQLLME ENSKLRSDNR NLINENTKMR QEREKLHKEV 120 QNTTTSTSSC MTTPISSSSD TFESAALICE PLPWERVSVK LEEEESSTEE KPXIFQTNQT 180 PADLKQTALS ADYFCDNDEL QKIFDDLFND PEDPIDFDRF CNEVIEEEFD SDKSRDTTPS 240 PVEATFETQA STEYYEEPLP ENVLCENFEG QQQNVIEAYG TVAYAAISPS QQVPSPSMYT 300 NSLSPVLSVK EENFYSEQKV DQMEQPMPVW DELQESITLI DDGTISFDDP FLLPYEDVLI 360 SSDNFWVETT IEA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

XTKQVPSVPP MALKRPAPEP LTIDDVVDLI STSSNSHPAP PRKRERLTHL SMEEKLNRRK  60
MKNRVAAQTA RDRKKERVGK LEKALQLLME ENSKLRSDNR NLINENTKMR QEREKLHKEV  120
QNTTTSTSSC MTTPISSSSD TFESAALICE PLPWERVSVK LEEEESSTEE KPXIFQTNQT  180
PADLKQTALS ADYFCDNDEL QKIFDDLFND PEDPIDFDRF CNEVIEEEFD SDKSRDTTPS  240
PVEATFETQA STEYYEEPLP ENVLCENFEG QQQNVIEAYG TVAYAAISPS QQVPSPSMYT  300
NSLSPVLSVK EENFYSEQKV DQMEQPMPVW DELQESITLI DDGTISFDDP FLLPYEDVLI  360
SSDNFWVETT IEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	74	RRKMKNRVAAQTARDRKK