PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007263
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 372aa    MW: 41931.7 Da    PI: 6.7292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-3980PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-17147248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT+eEd++l+ +++q+G g+W++++   g+ R++k+c++rw +yl
        Pta007263  1 GPWTPEEDKKLLAYIEQHGLGNWRSVPVNAGLQRCGKSCRLRWTNYL 47
                     79*******************************************97 PP
2Myb_DNA-binding54.33.2e-175398148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+++ +E++ +++++++lG++ W+tIa +++ +Rt++++k++w+++l
        Pta007263 53 RGKFSLQEEQTIIQLHALLGNR-WSTIATHLP-KRTDNEIKNYWNTHL 98
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-24154IPR009057Homeodomain-like
SMARTSM007171.6E-10149IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-29194IPR009057Homeodomain-like
PfamPF002497.2E-16147IPR001005SANT/Myb domain
PROSITE profilePS5129417.705147IPR017930Myb domain
CDDcd001673.63E-12247No hitNo description
PROSITE profilePS5129426.1648102IPR017930Myb domain
SMARTSM007172.6E-1652100IPR001005SANT/Myb domain
PfamPF002496.6E-165398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2655102IPR009057Homeodomain-like
CDDcd001671.27E-115598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
GPWTPEEDKK LLAYIEQHGL GNWRSVPVNA GLQRCGKSCR LRWTNYLRPD IKRGKFSLQE  60
EQTIIQLHAL LGNRWSTIAT HLPKRTDNEI KNYWNTHLRK RLLKMGIDPV THKATFDPLN  120
LNDGQKSKEF RALSHKKQWE NARLEAEARH RETNLNPRAS RGLWMTGNNN GSDVLNMIML  180
HGNNTRSTMS SASTNNSSHI DHLIESPTSS LSFVESSDML PLFHHSIPLS HQESFCEYLQ  240
KKPLCEHFTG MDINNDNKTD GGSNVGDPNL LIPSSFHDPI FSDKHCNYFS THSISNEISS  300
HGDLGSEISS HVDLNTDLLQ QYLSEGPSCE PAVCSELAPE DQSSIANLGS GKDYWNDILK  360
MVNSSSSVDN IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2411025105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-2511025105C-Myb DNA-Binding Domain
1msf_C8e-2511025105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.196280.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659430.12e-85PREDICTED: myb-related protein 308
SwissprotQ9LE635e-84MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0E0LV594e-84A0A0E0LV59_ORYPU; Uncharacterized protein
STRINGOPUNC08G13770.16e-85(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.16e-83myb domain protein 106