PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007268
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 372aa    MW: 41630 Da    PI: 5.1446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-76314PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-18214264255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa a+++a+ k++g
  Pta007268 214 HYRGVRQRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAAVAYDRAAYKMRG 264
                7********.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-31213273IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23214274IPR016177DNA-binding domain
SMARTSM003801.1E-37214278IPR001471AP2/ERF domain
PfamPF008474.1E-13214264IPR001471AP2/ERF domain
CDDcd000183.88E-31214272No hitNo description
PROSITE profilePS5103223.314214272IPR001471AP2/ERF domain
PRINTSPR003671.1E-10215226IPR001471AP2/ERF domain
PRINTSPR003671.1E-10238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAMNSTQQCQ EPQQYAEMSH LLEDLDGLYE ESSLCAMMRN SPFDTSRNSS PEVESFIQSA  60
LAGNSVDDNR GETEMETEMP TPAVKPSRPS LSVSVPRRES FDWEKFSVGR GFRNVASVTP  120
PCVSPCLSAA WAKLPLNEND SEDMVLYGML KEAANKGWMP VTPKEETAME TKKEAEVFPV  180
KKEAEVFPVK KEADVRQETR TQQPVAKKKI VGRHYRGVRQ RPWGKFAAEI RDSARQGARV  240
WLGTFNTAEE AAVAYDRAAY KMRGSKALLN FPLQVASGSN NTCSSVEKPK SNGEDFLQNL  300
TTRKRERSAG DEVDSGRECR VKLEEFTRET EMMSKDMVDE LLCGRMTTPP LTPSGIDMSI  360
YNFLCPGQLM VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-34212278369ATERF1
3gcc_A9e-34212278369ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.194440.0embryo| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ7H3A61e-154J7H3A6_PINTB; Transcription factor 3 (Fragment)
TrEMBLJ7H6C41e-154J7H6C4_9SPER; Transcription factor 3 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.19e-42ethylene responsive element binding factor 1