PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007398
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 359aa    MW: 40135.4 Da    PI: 7.3706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-3476PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+++ + +G   W++ ++  g+ R++k+c++rw +yl
        Pta007398 19 RGPWTAEEDQKLINYLQHHGRTKWRSLPKLAGLSRCGKSCRLRWTNYL 66
                     89********************************************97 PP
2Myb_DNA-binding48.42.2e-1572115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++  Ed  ++++++ lG++ W++Ia++++ gRt++++k++w++
        Pta007398  72 RGNFSIHEDIVIIHLHAILGNR-WSAIASHLP-GRTDNEIKNHWNT 115
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-231169IPR009057Homeodomain-like
PROSITE profilePS5129417.6021466IPR017930Myb domain
SuperFamilySSF466896.74E-3017113IPR009057Homeodomain-like
SMARTSM007173.2E-141868IPR001005SANT/Myb domain
PfamPF002491.5E-151966IPR001005SANT/Myb domain
CDDcd001672.54E-112166No hitNo description
PROSITE profilePS5129425.40567121IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2570121IPR009057Homeodomain-like
SMARTSM007176.6E-1471119IPR001005SANT/Myb domain
PfamPF002494.8E-1372115IPR001005SANT/Myb domain
CDDcd001672.69E-1074117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
SEVIMGRTPC CVDHNGQKRG PWTAEEDQKL INYLQHHGRT KWRSLPKLAG LSRCGKSCRL  60
RWTNYLRPDI KRGNFSIHED IVIIHLHAIL GNRWSAIASH LPGRTDNEIK NHWNTRLKRQ  120
LPVMGIDPVT HSLLPVAPTD SFMASSSTVI ISRDAGCNTA LPESVVGLCR QYVNNIVDEY  180
SRLQLSQIGK HWATTNNAVM PQVPARPSSE KSLMHPSISM DQLLRPQTSG WFHGSQNDMT  240
QGFDSRQKYP IEGNAFSQEA LQFSKLEGKS EDMGNMIHSF GIPSFAVNET DVFCDELPSD  300
KEIMYNRSKT SYSMGISEIL EAAIQYSPGD PFGSPMSTAA RADLLDREGE ITTGIILLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31191217108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.179050.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330734.14e-68myb domain protein 16
RefseqNP_197035.19e-68myb domain protein 16
SwissprotQ9LXF18e-69MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A178UJ102e-66A0A178UJ10_ARATH; MYB16
TrEMBLA0A1P8BBQ79e-67A0A1P8BBQ7_ARATH; Myb domain protein 16
STRINGAT5G15310.13e-67(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-71myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]