PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007425

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 357aa MW: 40660.8 Da PI: 5.0719

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-42074	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.5	1.9e-14	51	136	1	82
trihelix 1 rWtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWt e laL++ + +e++l+ + + +W+ +s+++++ ++r++ qC++kwe l +ykkike+e++ ++++s + + Pta007425 51 RWTLTEMLALVREKWAVENELQLSpsksqfSGVSDKWSIISNRCAASHVQRTAGQCRKKWELLISDYKKIKEWERQ--CGVESYWNLS 136 8*******************6422222246789**************************************8..8999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-9	51	157	No hit	No description
PROSITE profile	PS50090	7.004	62	114	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEGSHHYVSH FAKTQQEEGQ PASSIEEMDP TLQEAVRLSS SHSTRLQVAP RWTLTEMLAL 60 VREKWAVENE LQLSPSKSQF SGVSDKWSII SNRCAASHVQ RTAGQCRKKW ELLISDYKKI 120 KEWERQCGVE SYWNLSHSAK REHKLPFYLE RELFDAMDAN LDKTPTACPD ATFDSMDVAA 180 DSLFTSNDDS QDXDGQDAGS NGFRYMIIFI DVXFSDCLDE YQPFCHCLSG SYGHCACEGS 240 GNEPLDSTVR HKRRRCSIED DREHDIISVL RENCQNIQAV IRETTQAQMC SSQLDRDMYW 300 KGIEVNKQVQ LQTSELDREL KRKQGQDLID VLGGLVNAVN RLVDTIQNKS SQQLNGP

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEGSHHYVSH FAKTQQEEGQ PASSIEEMDP TLQEAVRLSS SHSTRLQVAP RWTLTEMLAL  60
VREKWAVENE LQLSPSKSQF SGVSDKWSII SNRCAASHVQ RTAGQCRKKW ELLISDYKKI  120
KEWERQCGVE SYWNLSHSAK REHKLPFYLE RELFDAMDAN LDKTPTACPD ATFDSMDVAA  180
DSLFTSNDDS QDXDGQDAGS NGFRYMIIFI DVXFSDCLDE YQPFCHCLSG SYGHCACEGS  240
GNEPLDSTVR HKRRRCSIED DREHDIISVL RENCQNIQAV IRETTQAQMC SSQLDRDMYW  300
KGIEVNKQVQ LQTSELDREL KRKQGQDLID VLGGLVNAVN RLVDTIQNKS SQQLNGP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.20624	0.0	root\| shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NXN9	0.0	A9NXN9_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-25	Trihelix family protein