PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007453
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family SBP
Protein Properties Length: 355aa    MW: 39068.8 Da    PI: 8.7529
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-18196PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.84.3e-40181258178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cq egC+a+ls+ak+yhrrhkvCe+hskap+v+v g+ qrfCqqCsrfh  sefD +krsCr+rLa+hn+rrrk+++
  Pta007453 181 QCQSEGCKANLSSAKHYHRRHKVCEFHSKAPTVVVGGQIQRFCQQCSRFHPTSEFDGGKRSCRKRLADHNRRRRKPKP 258
                5**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.3E-34176243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-37180260IPR004333Transcription factor, SBP-box
PfamPF031108.7E-32182255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
TVYGLDEESV NLDANVKAVT GDSFALSSLH LEMQTSRGHN RPCMSSHNTD RPKPRNLRMT  60
SEFVEGSLES ASSRNSSALL DSPRLYWQDQ FVDPCSMWTL GYSSDHTTLE QPSGVIEKRG  120
KLVHGCYFMK EEKGLFPARM ELNYSGPGST AYSGGASEGT CHGNTFCRTE ISSFTGSQIP  180
QCQSEGCKAN LSSAKHYHRR HKVCEFHSKA PTVVVGGQIQ RFCQQCSRFH PTSEFDGGKR  240
SCRKRLADHN RRRRKPKPSQ CTTSQCQAGT TNLQDDNKKT KGLSGHAAAG IQIIPNMIAN  300
TNTTPSLITS ATLLSSGTMM MFPNNYRGQI PVPQGTSNDK TSCVEFLHAN IPQMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-27177255684squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238255KRSCRKRLADHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.136530.0root| xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-40squamosa promoter binding protein-like 8