PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007556
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 347aa    MW: 39292.3 Da    PI: 6.2386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-40185PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2064113255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++ a++k++g
  Pta007556  64 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEGAARAYDDAALKFRG 113
                8********.**********94....45************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-3663122No hitNo description
SuperFamilySSF541713.73E-2264122IPR016177DNA-binding domain
PROSITE profilePS5103225.72564121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3264122IPR001471AP2/ERF domain
SMARTSM003806.7E-3864127IPR001471AP2/ERF domain
PfamPF008471.7E-1364113IPR001471AP2/ERF domain
PRINTSPR003671.4E-116576IPR001471AP2/ERF domain
PRINTSPR003671.4E-1187103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
CRDEVQMTNS VKPDDISGNK LHYLQKNRAQ SRISNTSKVF XEDDLRSKLK DEIQQPQNPT  60
KNKRYRGVRQ RPWGKWAAEI RDPKKAARVW LGTFDTAEGA ARAYDDAALK FRGVRAKLNF  120
PERVNIRDED NPGVNIVNEE NAAISDFSVQ VAPATYWPSA PTYVNLSAPA RPAHCDAVHH  180
GHPSQHFITA DSTCLSQVSD VYHYAQLLQD QIFDVQQANS HPTLLQQYLA SMKYQQESEV  240
YNQQLPSITS IQNQPGLDYI SQLQITGRPN LASSNYAGAG LPMCSNYMQQ QQQQQPSITI  300
TGYEELYDMD EKFIDQTCGN LLPTSQSQSK SYDNLDYNSE VLPAHNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2761125267ATERF1
3gcc_A7e-2761125267ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.155900.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2881e-150A9P288_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-27related to AP2 6l