PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007622
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 342aa    MW: 36994.8 Da    PI: 9.9066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-61318PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31271329259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+v+++tYegeH h+
  Pta007622 271 SDEFSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERALDDPNVLIVTYEGEHSHS 329
                69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.7E-16220268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.9E-32258329IPR003657WRKY domain
PROSITE profilePS5081130.251265331IPR003657WRKY domain
SuperFamilySSF1182902.75E-26268329IPR003657WRKY domain
SMARTSM007744.1E-37270330IPR003657WRKY domain
PfamPF031062.1E-26272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MLDSRNFMDR DVHQAASATL ESVQNLIQLI SRHREMQDER ESQCGSAAEM AANRFKRVVS  60
MLGTTTGHAR FRKAPAGSSV PAPKISPSFE PGHANMSAAA VASCSSQEPL KDSEGFISPA  120
PLNNNTLFRP TPLHVQAPAQ NPVMDSSPQQ PKISLVPVNS DYSFMGSRSF KESVISSPPL  180
SSTNSFISTL TASDPCDKTS ILVRSLSPTA VGRPPLSSSK KACIHGKLDD LSGKCNTTGG  240
RCHCSSKRKK SRVKRTIRVP AVSAKLADIP SDEFSWRKYG QKPIKGSPHP RGYYKCSTVR  300
GCPARKHVER ALDDPNVLIV TYEGEHSHSH SVSENTGLVL DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21258328271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.72900.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AD760.0D5AD76_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-64WRKY DNA-binding protein 7