PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007673

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB

Protein Properties

Length: 338aa MW: 38121.6 Da PI: 5.4942

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-31870	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l +++ +G g Wk +++ g++R++k+c++rw +yl Pta007673 14 RGAWTKEEDMILSTYIQTHGDGGWKILPQKAGLNRCGKSCRLRWMNYL 61 89********************************************97 PP
2	Myb_DNA-binding	48.8	1.6e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr +++E++l+++ +++lG++ W++Ia +++ gRt++++k++w++ Pta007673 67 RGRISADEEDLIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 8999****************.*****.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.75	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.25E-8	16	61	No hit	No description
PROSITE profile	PS51294	25.114	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.43E-10	71	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGRSPCCSKQ GLNRGAWTKE EDMILSTYIQ THGDGGWKIL PQKAGLNRCG KSCRLRWMNY 60 LRPDIKRGRI SADEEDLIIR MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT QLSKKLPPLK 120 QSQANSSTKS LETKWRSSSP LPTRVFKAIP LKITTAMRGS GIVRENSYNS DGCNNSSLNG 180 SLKSCNINET GNFSQSCCDL LANNSITPDD SERIAFQRAD ANFVEAEFAD EESPHSDHCG 240 GNTAILEESL LDFSDLSLPR WNRLFSSSDC DTDFGLEELY RGAAMELNEF EDFMCSDQNN 300 MEKVNSFEVV ANQGIDHCDS KHAYCIDEVI YLQETKKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.21088	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1W2KRF4	1e-126	A0A1W2KRF4_PINRA; MYB transcription factor MYB6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-60	myb domain protein 3