PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007700
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ZF-HD
Protein Properties Length: 337aa    MW: 36965.9 Da    PI: 7.7247
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-75512PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.72.1e-31134189359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   vrY+eC+kNhAa++G+ha+DGCgEfm+s g +gta+alkC ACgCHRnFHR+eve 
    Pta007700 134 IVRYRECQKNHAANIGSHALDGCGEFMAS-GLDGTAEALKCQACGCHRNFHRQEVEG 189
                  689*************************9.999********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-19135200IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.1E-29135187IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.9E-28136187IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.679137186IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.84E-19267335IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-31267335IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-26274331IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
XDRDYQDCSG IRIRALYGKN WQINGLDLDF DLDLDLGLDL GLGLGFENXM MDHHHHHAHH  60
QIPVSISPVS VHDISRLQQH QLFHNPANIV HEAGTGNNNI HSNSNNVHVT QNGNGDDGKP  120
LVEKSKKGES GEKIVRYREC QKNHAANIGS HALDGCGEFM ASGLDGTAEA LKCQACGCHR  180
NFHRQEVEGE GGLDGWYSGP AGRSRVDKKR LLPGVGNVGV PLFSSPSPPP AATAVNASGP  240
QMLMALSSAC TLGDQEFHEG LVGRGVGSSS SAMKKRFRTK FSQEQKEKMH AFAEQLGWRI  300
QKHDEAAVHQ FCNEVGVRRH VLKVWMHNNK NTVGKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-272753321875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.149560.0needle| root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SB615e-58ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLB8LM961e-143B8LM96_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-56homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]