PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007708
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 336aa    MW: 36796.1 Da    PI: 9.5136
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-63599PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-184191155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s y+GVr +k +g+Wv+e+r+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  Pta007708 41 SPYRGVRMRK-WGKWVSEVREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 91
               68******99.*******9998...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-2141100IPR016177DNA-binding domain
SMARTSM003807.6E-3742105IPR001471AP2/ERF domain
PROSITE profilePS5103222.8794299IPR001471AP2/ERF domain
CDDcd000183.99E-2943100No hitNo description
PfamPF008471.3E-114391IPR001471AP2/ERF domain
PRINTSPR003672.8E-94354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3043101IPR001471AP2/ERF domain
PRINTSPR003672.8E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEHECSTSEP HGSGGGGGMK RSSTGAGGGG GVGGGGGGKG SPYRGVRMRK WGKWVSEVRE  60
PNKRSRIWLG SYSTPEAAAR AYDTAVFYLR GPSATLNFPE EARKEQQSDL RLSQLGELSP  120
SSIQRRAAEV GAAVDHAMQA GPVPAQTLRE INQENDMKNA LSSKLSEGNN FKIEAKNNMR  180
QQGLSSKSSD NIFKFDEKNN TMLQGLSSKP SDNIFKFEEK NNTRLQGLNL KPSECDIFPF  240
EEKSNKKLPG FISRSIKKSD VCKVEGMTEE ADEEKSDQMR LNLRERDWFK IKDPVSGIGT  300
ALNLGQFAIH NVQGIADHGG EHTTLGLSVY RPEKRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1628101474Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.41680.0embryo| root| xylem