PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007743
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 333aa    MW: 37449.2 Da    PI: 6.3122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-13369PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-153076248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W +eEd +l d+++ +G+g+W+  +++ g+ R++k+c++rw +yl
        Pta007743 30 GPWKPEEDMILCDYIRIHGPGRWRDLPQKAGLQRCGKSCRLRWINYL 76
                     89*******************************************97 PP
2Myb_DNA-binding43.57.3e-1482126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E++ +++ +++lG++ W++Ia +++ gRt++++k++w+ +
        Pta007743  82 RGNISIDEEDVIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNHWNFH 126
                      6777889***************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-232079IPR009057Homeodomain-like
PROSITE profilePS5129415.3082476IPR017930Myb domain
SuperFamilySSF466899.38E-2826123IPR009057Homeodomain-like
SMARTSM007171.9E-102878IPR001005SANT/Myb domain
PfamPF002495.4E-133076IPR001005SANT/Myb domain
CDDcd001672.11E-93176No hitNo description
PROSITE profilePS5129423.41877131IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2280130IPR009057Homeodomain-like
SMARTSM007172.0E-1181129IPR001005SANT/Myb domain
PfamPF002496.5E-1282126IPR001005SANT/Myb domain
CDDcd001671.22E-988127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
GEQIVSCGAA ENIFKMGRAP CCSKQGLNQG PWKPEEDMIL CDYIRIHGPG RWRDLPQKAG  60
LQRCGKSCRL RWINYLRPDV KRGNISIDEE DVIIRMHRLL GNRWSLIAGR LPGRTDNEIK  120
NHWNFHLQKK VPPIQGSQRK KTLKIDAIKP TPVRIKTAVM HTEMANPNVF NSSVCSNCTS  180
SDHSFNFFTN QENANSSVSF CDPPVEDPIA EDHSEGTAVA NLGDVNLIET EVTNFNSADQ  240
QSPHCDQFAG NPATIAKSLC DLNELLSADC SLLTPVNSFM TDFELEEFNM GVETKKSQCM  300
GYDQNNMQYI HSSIVADGHW RVDIHDAVHH VDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272713125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.221140.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012411.17e-65PREDICTED: transcription factor WER
RefseqXP_010047497.11e-64PREDICTED: myb-related protein 330
RefseqXP_021276285.18e-65transcription factor WER-like
TrEMBLB8LMJ63e-95B8LMJ6_PICSI; Uncharacterized protein
STRINGEOY300303e-64(Theobroma cacao)
STRINGXP_010047497.15e-64(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.13e-60myb domain protein 41