PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007786
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 331aa    MW: 36404.9 Da    PI: 8.4015
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-33049PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-13100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
        Pta007786 100 PWSEEEHRMFLYGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.29924IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.9493149IPR017930Myb domain
SuperFamilySSF466892.17E-1795150IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1896148IPR006447Myb domain, plants
SMARTSM007175.1E-1197147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1197143IPR009057Homeodomain-like
CDDcd001671.65E-9100145No hitNo description
PfamPF002491.8E-10100144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVKELLMMCS NCGHSGHSSR ACPDRGSVKL FGVRLIATDD GMACMRKSLS MGNLGHYRSL  60
YNVNHCSGTS ECGSADQDGY LSDGFVHSSS NARERKKGVP WSEEEHRMFL YGLEKLGKGD  120
WRGISRNFVT TRTPTQVASH AQKYFLRQSN LNKRKRRSSL FDMCPHDSHV TSSFRREDSL  180
GNLYEFSPKH SALGVSPNFE LYSFGVSPTL SLGRSLQPVE AVLEEKAAHY HPVNSEEDTS  240
SMSSTTDAPA KEKNSWPSSA PQKFQLSLWP ELELMTSSNA SSGKENGMKP MVAGMPVHCG  300
ENTDLSLSIA LPPRNTSLNS NGSLSNAIRV V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.343400.0needle| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3G6JAE70.0A0A3G6JAE7_PINTA; Myb-related protein H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-65MYB_related family protein